The Xanthomonas Resource

Species

Pathovar

Strain

Origin

Host

Disease

Description

NCBI ID

GenBank

RefSeq

Reference

URL

musacearum

Kenyan

Kenya

Banana

Banana wilt

Banana bacterial wilt, an emerging disease of bananas in the great lakes region of Eastern Africa.

AGFQ00000000 (512 contigs)

unpublished

glycines

12-2

Soybean Glycine max

Bacterial pustule

AJJO00000000 (465 contigs)

unpublished

glycines

8ra

Ames, IA (1980)

Soybean (Glycine max)

Bacterial pustule

JDSU00000000 (13 contigs)

not available

juglandis

NCPPB1447

Persian (English) walnut (Juglans regia)

Walnut blight

AJTL00000000 (371 contigs)

unpublished

DAR61454

Australia (1988)

Wheat

Black chaff

LMG 25863

Belgium

Strawberry

Angular leaf spot

manihotis

CIO151

Cassava

Bacterial blight

not available

not available

not available

fuscans

4834-R

France (1998)

Bean

Common bacterial blight

FO681494
FO681495
FO681496
FO681497

NC_022541
NC_022539
NC_022540
NC_022542

LMG 19145, LMG 19146

Strawberry, questioned by Vandroemme et al., 2013

Disease questioned by Vandroemme et al., 2013

not available

not available

not available

CFBP 4642

Malawi (1951)

Cassava (Manihot esculenta)

Bacterial necrosis

ATMC00000000 (83 contigs)

not available

malvacearum

X18, X20

Burkina Faso

Cotton (Gossypium spec.)

Bacterial blight

172044
172045

ATMA00000000 (22 contigs)
ATMB00000000 (17 contigs)

not available

malvacearum

GSPB 1386, GSPB 2388

Nicaragua (1986), Sudan (1994)

Cotton (Gossypium spec.)

Bacterial blight

180039
180040

AHIB00000000 (127 contigs)
AHIC00000000 (61 contigs)

NZ_AHIB00000000
NZ_AHIC00000000

graminis

Xtg29

Switzerland

Italian ryegrass (Lolium multiflorum)

Bacterial wilt

ANGG00000000 (788 contigs)

campestris

CN14, CN15, CN16

Guilin (China) (2003)

Brassica juncea var. foliosa, Brassica rapa subsp. chinensis, and Brassica rapa subsp. pekinensis

Black rot

185972
185973
185974

AQOP00000000 (165 contigs)
AQOO00000000 (73 contigs)
AQON00000000 (80 contigs)

NZ_AQOP00000000
NZ_AQOO00000000
NZ_AQON00000000

corylina

NCCB 100457

Colorado (USA) (2010)

Turkish Hazel (Corylus colurna)

Leaf spot

APMC00000000 (281 contigs)

citri

A^w12879

Florida (USA)

Mexican lime (Citrus aurantifolia)

Citrus canker

CP003778
CP003779
CP003780

NC_020815
NC_020816
NC_020817

campestris

Xca5

America

Brassicaceae

Black rot

CAOR00000000 (130 contigs)

JX

The strain is a efficient strain capable of producing xanthan gum.

AJVO00000000 (155 contigs)

vasculorum

NCPPB 1326, NCPPB 1381, NCPPB 206

Sugarcane

Gumming disease

200191 200192 200193

AKBK00000000 (580 contigs) AKBL00000000 (603 contigs) AKBM00000000 (248 contigs)

NZ_AKBK00000000 NZ_AKBL00000000 NZ_AKBM00000000

X. campestris (vasicola)

musacearum

NCPPB 2005, NCPPB 4379, NCPPB 4380, NCPPB 4384, NCPPB 4392, NCPPB 4394

Banana

Enset wilt

200185 200186 200187 200188 200189 200190

AKBE00000000 (221 contigs) AKBF00000000 (279 contigs) AKBG00000000 (314 contigs) AKBH00000000 (1849 contigs) AKBI00000000 (300 contigs) AKBJ00000000 (481 contigs)

NZ_AKBE00000000 NZ_AKBF00000000 NZ_AKBG00000000 NZ_AKBH00000000 NZ_AKBI00000000 NZ_AKBJ00000000

manihotis

65 strains

Cassava (Manihot esculenta)

Bacterial blight

121-888 contigs

mangiferaeindicae

LMG941

India (1957)

Mango (Mangifera indica)

Black spot

CAHO01000001 (195 contigs)

punicae

LMG859

India

Pomegranate (Punica granatum)

Leaf blight

To understand the ecology and evolution of Xanthomonas axonopodis pv. punicae by whole genome sequencing.

CAGJ01000001 (217 contigs)

unpublished

NCPPB4393

Tanzania (2007)

Isolated from insect on diseased Musa species

Comparative genomics of banana-associated bacteria. This bacterium was isolated from an insect associated with banana plant in Tanzania.

AGDB00000000 (470 contigs)

unpublished

Xanthomonas spec.

NCPPB1132

Western Samoa (1961)

Banana (Musa canksii var. samoensis)

Comparative genomics of banana-associated bacteria. Bacterium isolated from banana in Western Samoa.

AGHZ00000000 (1717 contigs)

unpublished

Xanthomonas spec.

NCPPB1131

Eastern Samoa (1961)

Banana (Musa paradisiaca)

Comparative genomics of banana-associated bacteria. Bacterium isolated from banana in Eastern Samoa.

AGHY00000000 (3224 contigs)

unpublished

citrumelo

F1 (FL 1195)

Florida (USA) (1984)

Citrus

Bacterial spot

73179 (62495)

raphani

756C

East Asia

Brassica oleracea var. capitata

Leaf spot

unpublished

oryzicola

BLS256

Philippines

Rice

Bacterial streak

This strain causes bacterial streak disease, a disease which is increasing in frequency in Asia. This strain induces hypersensitive response in a maize line carrying Rxo1.

carotae

M081

Oregon (USA)

Carrot (Daucus carota)

Bacterial leaf blight

This organism is an important carrot pathogen.

unpublished

unpublished

X8-1A

Louisiana (USA) (1987)

Rice

Bacterial leaf blight

X. oryzae strains X11-5A and X8-1A are the first sequenced strains from a distinct United States clade of the rice bacterial leaf blight pathogen Xanthomonas oryzae

AFHL01000000 (875 contigs)

unpublished

X11-5A

Texas (USA) (1987)

Rice

Bacterial leaf blight

X. oryzae strains X11-5A and X8-1A are the first sequenced strains from a distinct United States clade of the rice bacterial leaf blight pathogen Xanthomonas oryzae

AFHK01000000 (529 contigs)

unpublished

1111 (ATCC 35937)

New Zealand

Tomato and pepper (isolated from Lycopersicon lycopersicum

Bacterial spot

63613 (60019)

AEQV00000000 (296 contigs)

unpublished

91-118

Tomato

Bacterial spot

63619 (60021)

AEQW01000000 (291 contigs)

unpublished

101 (ATCC 19865)

Yugoslavia

Tomato and pepper (isolated from Lycopersicon esculentum)

Bacterial spot

63615 (60023)

AEQX01000000 (552 contigs)

unpublished

X. campestris (vasicola)

musacearum

NCPPB4381

Uganda

Banana

Bacterial wilt (BXW)

ACHT01000000 (751 contigs)

NZ_ACHT00000000 (115 scaffolds)

X. campestris (vasicola)

vasculorum

NCPPB702

Zimbabwe

Sugarcane

Gumming disease

ACHS01000000 (488 contigs)

NZ_ACHS00000000 (97 scaffolds)

aurantifolii

ICPB 11122

Citrus

Citrus canker

This subspecies causes cankers on Citrus spp. This strain, also known as Xanthomonas fuscans subsp. aurantifolii B causes a type of Citrus canker, known as B cancrosis, a very desctrutive and world-wide disease, infecting mainly lemons in Argentina, Paraguay and Uruguay.

ACPX00000000 (237 contigs)

aurantifolii

ICPB 10535

Citrus

Citrus canker

This subspecies causes cankers on Citrus spp. This strain, also known as Xanthomonas fuscans subsp. aurantifolii C causes a type of Citrus canker, known as Mexican lime cancrosis or C cancrosis.

ACPY00000000 (351 contigs)

GPE PC73

Guadeloupe

Sugarcane

Leaf scald

Xanthomonas albilineans produces a potent toxin, albicidin, which is responsible for the characteristic whitening of sugar cane leaves and stunted plant growth. Infection with Xanthomonas albilineans can lead to rapid wilting and death. Plants infected with Xanthomonas albilineans can be asymptomatic with active disease occurring after a period of stress, such as a drought. Xanthomonas albilineans GPE PC73 was isolated in Guadeloupe and is closely related to strains isolated in Asia, Africa, and North America.

oryzae

PXO99^A

Los Baños (Philippines)

Rice

Bacterial blight

This strain is a representative strain of race 6 isolated in the Philippines. This plant pathogen affects rice plants by causing leaf blight, a major problem in Asian countries where rice production occurs on an industrial scale. This organism enters the xylem and spreads throughout the vascular tissue of the plant, which results in wilting of the plant, or to leaf blight if the infection occurs later in development.

campestris

B100

Italy

Brassica oleracea var. botrytis

Black rot

This species is a major cause of black rot in crucifers, a disease that results in massive tissue degeneration. It also produces an extracellular polysaccharide known as xanthan, which is harvested commercially as a food stabilizing agent for use in industry.

vesicatoria

85-10

Florida (USA), 1985

Pepper

Bacterial spot

This pathovar can be divided into three races, pepper race 1 which causes disease in all peppers, pepper race 2 which causes a limited disease in peppers that have a specific resistance gene, and a tomato strain which causes a limited disease in all peppers. Xanthomonas campestris pv. vesicatoria strain 85-10 is a pepper race 2 strain.

AM039952
AM039948
AM039949
AM039950
AM039951

NC_007508
NC_007504
NC_007505
NC_007506
NC_007507

oryzae

MAFF 311018

Japan

Rice

Bacterial blight

This strain (MAFF 311018; T7174) is a Japanese representative strain of race I. This plant pathogen affects rice plants by causing leaf blight, a major problem in Asian countries where rice production occurs on an industrial scale. This pathogen enters the xylem and spreads throughout the vascular tissue of the plant, which results in wilting of the plant, or to leaf blight if the infection occurs later in development.

campestris

8004

Sussex (UK), 1958

Cauliflower

Black rot

This species is a major cause of black rot in crucifers, a disease that results in massive tissue degeneration. It also produces an extracellular polysaccharide known as xanthan, which is harvested commercially as a food stabilizing agent for use in industry. This strain is a derivative of strain NCPBB No. 1145. The original was isolated from an inflected cauliflower in Sussex, United Kingdom, in 1958. Strain 8004 is a spontaneous rifampicin resistant strain and has been used extensively in many studies.

oryzae

KACC10331

Korea

Rice

Bacterial blight

This plant pathogen affects rice plants by causing leaf blight, a major problem in Asian countries where rice production occurs on an industrial scale. Losses of up to 50% of the total crop can occur in extreme cases. This pathogen enters the xylem and spreads throughout the vascular tissue of the plant, which results in wilting of the plant, or to leaf blight if the infection occurs later in development.

citri

306

unknown

Citrus

Citrus canker

This species causes citrus canker, a localized infection which affects citrus plants worldwide. Virulence may increase if the insect Phyllocnistis citrella, a citrus leaf miner, is present.

AE008923
AE008924
AE008925

NC_003919
NC_003921
NC_003922

campestris

ATCC 33913

unknown

Cabbage

Black rot

This species is a major cause of black rot in crucifers, a disease that results in massive tissue degeneration. It also produces an extracellular polysaccharide known as xanthan, which is harvested commercially as a food stabilizing agent for use in industry.