The Xanthomonas Resource
Purpose
Algorithm
URL
Reference
Wikipedia: Xanthomonas
Wiki
.
Microbe Wiki: Xanthomonas
Wiki
.
CPGR: Comprehensive Phytopathogen Genomics Resource
Database
.
DIGAP: Database of Improved Gene Annotation in Phytopathogens
Database
PAMDB: Plant Associated and Environmental Microbes Database
Database
Pseudomonas syringae Genome Resources
Database
.
The Xanthomonas sp. Portal
Database
.
Réseau FNX: French Network on Xanthomonads
Database
.
The Xanthomonas Genomics Resource
Database
.
Xanthobase: Xanthomonas oryzae pv. oryzae genome database
Database
.
The Xanthomonas Genome Browser
Database
.
Comparative genome analysis
EDGAR
Functional profiling of proteomes
UFO
Prediction of secretion systems (T3SS, T4SS, T6SS)
T346Hunter
Type III effector database
T3SEdb
Type III effector database
T3DB
TAL effector targets finder
Talvez
Suite for the functional and phylogenetic comparison of TAL effectors
QueTAL
Annotation and analysis of TAL effector genes
AnnoTALE suite
List of TALEs
Complete DNA sequences of all TALEs
List of TALE classes
Type III effector prediction
SIEVE
Type III effector prediction
EffectiveT3
Type III effector prediction
modlab
Type III effector prediction
Classifier
Method and data available upon request
Type III effector prediction
Classifier
Discriminant functions available upon request
Type III effector prediction
T3SEdb
Type III effector prediction
HMM (EPIYA motif)
.
Type III effector prediction
BPBAac
Type III effector prediction
EffectPred
Type III effector prediction
BEAN
Type III effector prediction
T3_MM
Type III effector prediction
cSIEVE
.
Type III effector prediction
T3SPs
Type III effector prediction
HMM-LDA
.
Type III effector prediction
pEffect
Type III effector prediction
GenSET
.

-- Ralf Koebnik - 27 January 2017 --