Bioinformatics

Molecular biology in the internet

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Bioinformatics

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Exercises

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Databases

Software

Sequence comparisons

Homology searches

Motif searches

Hidden Markov models

Hydrophobicity analyses

Topology and helix packing

Protein localization

Secondary structure

Super-secondary structure

3D structure

 

    Exercises:

  • Exercise #1: Pairwise sequence comparison

  • Exercise #2: Short peptides: Database search and multiple alignment

  • Exercise #3: Consensus sequence, signature/pattern, profile and HMM

  • Exercise #4a: Homology search in protein databases: Hrp proteins

  • Exercise #4b: Homology search in protein databases: Hpa proteins

  • Exercise #4c: Homology search in protein databases: Xop proteins

  • Exercise #5: Localization and membrane topology of proteins

  • Exercise #6: Localization of bacterial proteins

 

Latest update: October 15, 2009


Ralf Koebnik
Institut de recherche pour le dèveloppement
UMR 5096, CNRS-UP-IRD
911, Avenue Agropolis, BP 64501
34394 Montpellier, Cedex 5
FRANCE
Phone: +33 (0)4 67 41 62 28
Fax: +33 (0)4 67 41 61 81
Email: koebnik(at)gmx.de
Please replace (at) by @.


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